Small-batch gluten-free peanut butter chocolate chip cookies that are soft, chewy and irresistibly delicious — yes, please. This recipe yields the perfect cookie in my opinion: creamy peanut butter and lots of chocolate create gooey centers with crisp edges. The dough uses simple pantry ingredients, does not require chilling and can be baked immediately, making it ideal when you want just a few freshly baked cookies.

Recipe Ingredient Notes
Gluten-free flour: This small-batch cookie recipe was tested with several gluten-free multipurpose flour blends. Some blends produce denser cookies that benefit from a slight press before baking, while others spread more and create a crisper edge. All tested blends contained a binder such as xanthan gum. If you use a different blend, expect some variation in texture and spread.
Peanut butter: Peanut butter is the star here. Standard commercial peanut butters (the smooth, stabilized varieties) perform reliably in baking because they resist separation. Both creamy and chunky styles work; choose your preference.
Chocolate: I used a mix of dark chocolate chunks, semi-sweet chips and chopped milk chocolate to create pockets of melty chocolate throughout each cookie. Feel free to vary the ratio for your ideal chocolate intensity.
Tools needed to make Peanut Butter Chocolate Chip Cookies
You don’t need a stand mixer for this small batch. Useful tools include:
- a small saucepan or microwave-safe bowl to melt butter
- a digital kitchen scale for accurate measurements
- a large mixing bowl
- a whisk, flexible spatula or wooden spoon
- a cookie scoop or a scale to portion dough
- a baking sheet and parchment paper

Step by Step Instructions
The dough comes together quickly. Start by melting the butter; while it cools, gather ingredients and preheat the oven. This recipe works with an egg at room temperature or straight from the fridge.
Step 1: Melt the butter in a small saucepan or microwave-safe bowl. Transfer to a large mixing bowl and let cool for at least 5 minutes — it should remain liquid but not hot.
Step 2: Preheat the oven to 350°F (175°C). Line a baking sheet with parchment paper. Measure the remaining ingredients.
Step 3: Add the peanut butter to the cooled melted butter and whisk until smooth. The warm butter will help incorporate the peanut butter.


Step 4: Stir in the brown sugar until combined, then whisk in the egg yolk until smooth.
Step 5: Add the dry ingredients and chocolate, then fold with a spatula or wooden spoon. The dough may appear dry and crumbly; if so, use clean hands to press it together until cohesive.
Step 6: Divide the dough into six equal portions for medium cookies, or three larger portions for oversized cookies. Place extra chocolate pieces on top of each portion and gently press down — peanut butter cookies can need a little help spreading.


Step 7: Bake at 350°F for 9–12 minutes. For three large cookies bake about 11–13 minutes; for six smaller cookies bake around 9 minutes. The cookies should be puffy and golden at the edges; slightly underbaking yields a soft, chewy center.
Step 8: Remove from the oven and, if you prefer perfectly round cookies, use a slightly larger round cutter or bowl to nudge the cookies into shape while still warm. Sprinkle flaky sea salt on top if desired — salt enhances the peanut butter and chocolate.
Let cookies cool on the sheet for a few minutes before transferring to a rack, or enjoy warm. Store leftovers in an airtight container at room temperature for up to four days.


Variations of Peanut Butter Chocolate Chip Cookies
Try one of these simple variations to change texture or flavor:
Add roasted peanuts: Fold in chopped salted, roasted peanuts with the chocolate for extra crunch and intensified peanut flavor.
Add a candy bar: Stir in chopped peanut butter cups, Snickers or other chopped candy bars together with chocolate chunks for an indulgent treat.
Mix up the chocolate: Use a mix of milk chocolate and peanut butter chips or half milk and half dark for balance.
FAQ about Small Batch Gluten-Free Peanut Butter Chocolate Chip Cookies
If you need to avoid peanuts, consider using a tested non-peanut cookie recipe instead, as different nut butters vary in oiliness and may change texture.
Yes. Replace the butter with a firm dairy-free stick butter (avoid spreads and coconut oil) and use dairy-free chocolate chips.
Peanut butter dough can resist spreading. Press the cookie tops gently before baking. If they spread unevenly, you can reshape them warm with a round cutter.
Store cooled cookies in an airtight container at room temperature for up to four days.
To convert to wheat-based all-purpose flour, use 58 grams in place of the gluten-free flour. Do not substitute coconut or almond flour without adjusting liquid ratios and structure ingredients.

Note about Salt in the Recipes
Different salt types vary in intensity and crystal size. When following a recipe, adjust the amount if you use a salt with smaller or larger crystals than diamond-style kosher salt. If using a finer salt, use less by volume.
Baking by Weight
These recipes are shared by weight for accuracy. Digital kitchen scales are inexpensive and provide consistent results, especially with gluten-free flours that weigh differently than wheat flours. For very small amounts, use a precision pocket scale. Measuring by weight improves reliability and consistency in baking.
Note about Ovens and Temperatures
Recipes are developed for conventional ovens with racks placed in the middle position. Convection ovens (fan-forced) can dry baked goods more quickly; reduce temperature or time as needed and monitor closely. An oven thermometer helps ensure your oven temperature is accurate.
Substitutions and Modifications
Ingredient swaps and dietary modifications may change the final texture and flavor. Recipes are tested as written; if you modify ingredients, expect some variation in results.
More Gluten-Free Cookie Recipes to Try
Gluten Free Classic Biscotti
Gluten Free Oatmeal Cranberry Cookies
Gluten Free Oreo Chocolate Chip Cookies
Gluten Free Chocolate Chip Cookies
📖 Recipe
Small Batch Gluten Free Peanut Butter Chocolate Chip Cookies
15 minutes
15 minutes
5 minutes
35 minutes
Ingredients
For the Gluten Free Peanut Butter Chocolate Chip Cookies
- 45 grams unsalted butter, melted
- 30 grams peanut butter, creamy or chunky
- 50 grams brown sugar (light or dark)
- 1 large egg yolk
- 65 grams gluten-free multipurpose flour
- ¼ teaspoon baking soda
- ½ teaspoon (2 grams) kosher salt
- 50–75 grams chocolate chips, chunks or chopped chocolate bar
Garnish
- Additional chocolate for topping
- Flaky sea salt (optional)
Instructions
Gluten Free Peanut Butter Chocolate Chip Cookies
- In a small saucepan or microwave-safe bowl, melt the butter. Transfer to a mixing bowl and let cool for at least 5 minutes.
- Preheat the oven to 350°F and line a baking sheet with parchment paper.
- Measure the dry ingredients, peanut butter and sugar while the butter cools.
- Stir the peanut butter into the melted butter until smooth.
- Add the brown sugar and whisk to combine.
- Whisk in the egg yolk until fully incorporated.
- Add the dry ingredients and chocolate. Fold with a spatula; if the dough seems crumbly, use clean hands to bring it together.
- Divide the dough into six equal portions (or three for larger cookies). Top each portion with extra chocolate and gently press down.
- Bake at 350°F: about 11–13 minutes for three large cookies, or around 9 minutes for six smaller cookies. Cookies are done when puffy and golden at the edges.
- Optionally reshape warm cookies with a round cutter, sprinkle with flaky sea salt, cool briefly on the sheet, then transfer to a wire rack to cool completely.
Notes
The recipe performs as written when ingredients are measured accurately. Tested with multiple gluten-free flour blends. To convert to wheat all-purpose flour use 58 grams in place of the gluten-free flour.
Nutrition Information:
Yield:
6
Serving Size:
1
Amount Per Serving:
Calories: 200
Calories are an estimate.
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